Illumina amplicon sequencing of metagenomic paired-end library 'Pond-... - SRA

SRX479696: Illumina amplicon sequencing of metagenomic paired-end library 'Pond-323610' containing sample 'M34D21' from individual 'MyD88 TB Infected Mouse 4 Day 21'
2 ILLUMINA (Illumina HiSeq 2000) runs: 3M spots, 598.4M bases, 366.5Mb downloads

UUID: 75b974b8-f82e-4ecb-be1b-b3e1ad7fcaf5

Design: Illumina sequencing of Mycobacterium tuberculosis M34D21 via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: TB-ARC - Microbiome

PRJNA219721 • SRP032325 • All experiments • All runs

Sample: Generic sample from Mycobacterium tuberculosis M34D21

SAMN02391104 • SRS515938 • All experiments • All runs

Organism: Mycobacterium tuberculosis M34D21

Library:

Name: Pond-323610

Instrument: Illumina HiSeq 2000

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 479245.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5EPQG

material_type: DNA:DNA Somatic

product_order: PDO-2970

product_part_number: P-WG-0004

project: G61400

research_project: RP-114

root_sample_id: SM-4PMCL

sample_id: SM-5EPQG

work_request: 40078

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-26 09:39:52.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 3M spots, 598.4M bases, 366.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR1180493	1,487,541	300.5M	184.4Mb	2014-03-01
SRR1183403	1,474,998	297.9M	182.1Mb	2014-03-05

ID:: 669130

SRA

Sequence Read Archive

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